It's not true.
What the crews have been doing of late is LIDAR scanning every single point of the ROW. They do this to ensure clearances around the dynamic envelope of the trains, locations of platform edges and signals, catenary, etc. Once they have this, they will be able to hand that information over to Metrolinx (and the TTC) as one of the final steps required prior to the actual final sign-off on the line.
The crews doing that scanning do not have the technology to discern how far out the rails might be, if they were out. The LIDAR equipment is accurate, but not as accurate for the rail profile, crosslevel, etc. as the specialized equipment that is used for that task. That equipment has already been used and to the best of my knowledge has verified the rails' alignment.
If somehow the rails where so far out of whack as to require immediate replacement, they would not be running trains at the frequencies and speeds that they have been.
Dan